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Peptide folding in the presence of interacting protein crowders

Using Monte Carlo methods, we explore and compare the effects of two protein crowders, BPTI and GB1, on the folding thermodynamics of two peptides, the compact helical trp-cage and the β-hairpin-forming GB1m3. The thermally highly stable crowder proteins are modeled using a fixed backbone and rotatable side-chains, whereas the peptides are free to fold and unfold. In the simulations, the crowder p

Synchronizing Device Discovery on Loss of Update Messages in the Pervasive Middleware Palcom

PalCom is a pervasive middleware that enables users to combine the services on devices into useful configurations. Interconnected PalCom devices can discover, and keep track of, the existence of each other by exchanging periodic heartbeats within local networks, and once-sent device appearance/disappearance notifications across interconnected networks. This approach has the advantage of eliminatin

A Soft-Output MIMO Detector with Achievable Information Rate based Partial Marginalization

In this paper, we propose a soft-output detector for multiple-input multiple-output (MIMO) channels that utilizes achievable information rate (AIR) based partial marginalization (PM). The proposed AIR based PM (AIR-PM) detector has superior performance compared to previously proposed PM designs and other soft-output detectors such as K-best, while at the same time yielding lower computational comp

Ubiquity of organic nitrates from nighttime chemistry in the European submicron aerosol

In the atmosphere nighttime removal of volatile organic compounds is initiated to a large extent by reaction with the nitrate radical (NO3) forming organic nitrates which partition between gas and particulate phase. Here we show based on particle phase measurements performed at a suburban site in the Netherlands that organic nitrates contribute substantially to particulate nitrate and organic mass

Perception of Highlight Disparity at a Distance in Consumer Head-Mounted Displays

Stereo rendering for 3D displays and for virtual reality headsets provide several visual cues, including convergence angle and high- light disparity. The human visual system interprets these cues to estimate surface properties of the displayed environment. Naïve stereo rendering effectively doubles the computational burden of image synthesis, and thus it is desirable to reuse as many computa- tion

Efficient culling techniques for interactive deformable NURBS surfaces on GPU

NURBS (Non-uniform rational B-splines) surfaces are the standard freeform representation in Computer- Aided Design (CAD) applications. Rendering NURBS surfaces accurately while they are interactively manipulated and deformed is a challenging task. In order to achieve it, the elimination from pipeline in early stages of back-facing surfaces or surface pieces is a key advantage. Furthermore, an effe

A Generalized Zero-Forcing Precoder with Successive Dirty-Paper Coding in MISO Broadcast Channels

In this paper, we consider precoder designs for multiuser multiple-input-single-output (MISO) broadcasting channels. Instead of using a traditional linear zero-forcing (ZF) precoder, we propose a generalized ZF (GZF) precoder in conjunction with successive dirty-paper coding (DPC) for datatransmissions, namely, the GZF-DP precoder, where the suffix ‘DP’ stands for ‘dirty-paper’. The GZF-DP precode

Massive MIMO via Cooperative Users

We consider a case where K closely located users communicate with a base station in the uplink of a wireless communication system. Each user has a certain number of assigned time-frequency slots at its disposal. At a small cost, which we in this paper consider as negliable, the users can communicate with each other and share their data. Thus, they can cooperate in the uplink in order to save trans

Optimal Channel Shortener Design for Reduced-State Soft-Output Viterbi Equalizer in Single-Carrier Systems

We consider optimal channel shortener design for reduced-state soft-output Viterbi equalizer (RS-SOVE) in singlecarrier (SC) systems. To use RS-SOVE, three receiver filters need to be designed: a prefilter, a target response and a feedback filter. The collection of these three filters are commonly referred to as the “channel shortener”. Conventionally, the channel shortener is designed to transfor

Design of low profile MIMO antennas for mobile handset using characteristic mode theory

Designing highly integrated and efficient MIMO antennas for mobile handset is challenging, especially for low frequency bands below 1 GHz. In this work, by analyzing and manipulating the characteristic modes of a mobile handset, we propose a low profile dual-band MIMO antenna with high integration ability. Both antennas cover a bandwidth of 100 MHz at the center frequency of 0.9 GHz. The isolation

Non-Uniform Window Decoding Schedules for Spatially Coupled LDPC Codes

Spatially coupled low-density parity-check codes can be decoded using a graph-based message passing algorithm applied across the total length of the coupled graph. However, considering practical constraints on decoding latency and complexity, a sliding window decoding approach is normally preferred. In order to reduce decoding complexity compared with standard parallel decoding schedules, serial s

Underwater Terrain Navigation Using Standard Sea Charts and Magnetic Field Maps

Many ships today rely on Global Navigation Satellite Systems (GNSS), for their navigation, where GPS (Global Positioning System) is the most well-known. Unfortunately, the GNSS systems make the ships dependent on external systems, which can be malfunctioning, be jammed or be spoofed. There are today some proposed techniques where, e.g., bottom depth measurements are compared with known maps using

Braided Convolutional Codes with Sliding Window Decoding

In this paper, we present a novel sliding window decoding scheme based on iterative Bahl-Cocke-Jelinek-Raviv decoding for braided convolutional codes, a class of turbo-like codes with short constraint length component convolutional codes. The tradeoff between performance and decoding latency is examined and, to reduce decoding complexity, both uniform and nonuniform message passing schedules withi

Wireless channel dynamics for relay selection under ultra-reliable low-latency communication

Ultra-reliable, low-latency communication (URLLC) is being developed to support critical control applications over wireless networks. Exploiting spatial diversity through relays is a promising technique for achieving the stringent requirements of URLLC, but coordinating relays reliably and with low overhead is a challenge. Adaptive relay selection techniques have been proposed as a way to simplify

A Domain-Specific Language for Filtering in Application-Level Gateways

Application-level packet filtering is a technique for network access control in which an “application-level gateway” intercepts network packets at the application level (e.g., HTTP, FTP), scans them for security concerns and optionally logs, rewrites or discards them. Existing application-level filters express their filtering rules in general-purpose languages, which limits the correctness guarant

Multiuser Bandwidth Minimization with Individual Rate Requirements for Non-Orthogonal Multiple Access

Non-Orthogonal Multiple Access (NOMA) for a multi-user single- input single-output (SISO) setup is studied in the power and the frequency domains simultaneously. The problem of sum-bandwidth minimization under perfect channel state information is solved for various combinations of rate requirements and user pairings. In this process, an iterative Tabu-search based algorithm is applied to avoid an